Transcript: ENST00000409839.3 REG3A-001

Description

regenerating islet-derived 3 alpha [Source:HGNC Symbol;Acc:8601]

Gene Synonyms

HIP, HIP/PAP, INGAP, PAP, PAP-H, PAP1, PBCGF, REG-III, REG3

Location

Chromosome 2: 79,384,132-79,386,879 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 16 domains and features, is associated with 1949 variant alleles and maps to 314 oligo probes.

Gene

This transcript is a product of gene ENSG00000172016.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393878.1	REG3A-201	1002	175aa	ENSP00000377456.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1965	Q06141 Q53S56	NM_138938.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409839.3	REG3A-001	785	175aa	ENSP00000386630.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1965	Q06141 Q53S56	NM_138937.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000305165.2	REG3A-002	718	175aa	ENSP00000304311.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1965	Q06141 Q53S56	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000464746.1	REG3A-004	585	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490901.1	REG3A-003	546	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 785 bps, Translation length: 175 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q06141

CCDS

This transcript is a member of the Human CCDS set: CCDS1965

Version

ENST00000409839.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000252290 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000409839.3 REG3A-001

Summary