Transcript: ENST00000594209.1 LGALS4-004

Description

lectin, galactoside-binding, soluble, 4 [Source:HGNC Symbol;Acc:6565]

Gene Synonyms

GAL4, L36LBP

Location

Chromosome 19: 39,299,538-39,303,585 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 2 domains and features, is associated with 2168 variant alleles and maps to 85 oligo probes.

Gene

This transcript is a product of gene ENSG00000171747.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000307751.4	LGALS4-001	1535	323aa	ENSP00000302100.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12521	M0R349 P56470 Q6FHZ4	NM_006149.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000600070.1	LGALS4-007	661	218aa	ENSP00000470387.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000594209.1	LGALS4-004	566	31aa	ENSP00000472990.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R349	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000595291.1	LGALS4-008	691	38aa	ENSP00000471757.1	Nonsense mediated decay		M0R1B2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000597803.1	LGALS4-005	328	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000595278.1	LGALS4-003	1345	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000597153.1	LGALS4-002	969	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000596628.1	LGALS4-006	491	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000595342.1	LGALS4-009	413	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 566 bps, Translation length: 31 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000594209.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000462648 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000594209.1 LGALS4-004

Summary