Transcript: ENST00000357898.3 SPSB1-003

Description

splA/ryanodine receptor domain and SOCS box containing 1 [Source:HGNC Symbol;Acc:30628]

Gene Synonyms

SSB-1, SSB1

Location

About this transcript

This transcript has 3 exons, is annotated with 9 domains and features, is associated with 8081 variant alleles and maps to 185 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000328089.6	SPSB1-001	3120	273aa	ENSP00000330221.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS102	A2A276 Q96BD6	NM_025106.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357898.3	SPSB1-003	1439	273aa	ENSP00000350573.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS102	A2A276 Q96BD6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000377399.2	SPSB1-002	1007	273aa	ENSP00000366616.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS102	A2A276 Q96BD6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450402.1	SPSB1-004	822	202aa	ENSP00000409235.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2A276	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 1,439 bps, Translation length: 273 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96BD6

CCDS

This transcript is a member of the Human CCDS set: CCDS102

Version

ENST00000357898.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000303969 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.