Transcript: ENST00000370884.5 EXOSC1-004

Description

exosome component 1 [Source:HGNC Symbol;Acc:17286]

Gene Synonyms

CGI-108, CSL4, Csl4p, SKI4, Ski4p, hCsl4p, p13

Location

Chromosome 10: 99,196,163-99,205,774 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 6 domains and features, is associated with 4320 variant alleles and maps to 197 oligo probes.

Gene

This transcript is a product of gene ENSG00000171311.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000370902.3	EXOSC1-001	923	195aa	ENSP00000359939.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7459	Q9Y3B2	NM_016046.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370886.5	EXOSC1-009	741	178aa	ENSP00000359923.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AMU4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370885.4	EXOSC1-008	718	170aa	ENSP00000359922.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AMU3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000485122.2	EXOSC1-011	564	139aa	ENSP00000473660.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		R4GNH9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370884.5	EXOSC1-004	536	165aa	ENSP00000359921.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477692.2	EXOSC1-005	480	143aa	ENSP00000473303.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000471049.1	EXOSC1-012	642	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472345.1	EXOSC1-010	451	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474309.1	EXOSC1-013	260	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489158.1	EXOSC1-003	2113	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476234.1	EXOSC1-006	739	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 536 bps, Translation length: 165 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000370884.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000049683 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000370884.5 EXOSC1-004

Summary