Transcript: ENST00000448812.1 NPAS2-007

Description

neuronal PAS domain protein 2 [Source:HGNC Symbol;Acc:7895]

Gene Synonyms

BHLHE9, MOP4, PASD4, bHLHe9

Location

Chromosome 2: 101,541,608-101,587,511 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 19 domains and features, is associated with 19345 variant alleles and maps to 151 oligo probes.

Gene

This transcript is a product of gene ENSG00000170485.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000335681.5	NPAS2-001	4007	824aa	ENSP00000338283.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2048	A2I2P5 Q99743	NM_002518.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542504.1	NPAS2-201	2725	889aa	ENSP00000438428.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2I2P5 F5H027 H7C0Z2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433408.1	NPAS2-012	1047	269aa	ENSP00000393396.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000448812.1	NPAS2-007	774	258aa	ENSP00000388528.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000427413.1	NPAS2-004	625	207aa	ENSP00000397595.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C0Z2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000450763.1	NPAS2-010	607	202aa	ENSP00000392125.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BZY5	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000451740.1	NPAS2-005	321	107aa	ENSP00000395265.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C0J4	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000486017.1	NPAS2-008	764	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492373.1	NPAS2-006	552	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471974.1	NPAS2-009	513	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490052.1	NPAS2-011	398	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474550.1	NPAS2-002	7983	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495559.1	NPAS2-003	3834	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 774 bps, Translation length: 258 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000448812.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000329076 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000448812.1 NPAS2-007

Summary