Transcript: ENST00000502342.1 SMAD1-011

Description

SMAD family member 1 [Source:HGNC Symbol;Acc:6767]

Gene Synonyms

BSP-1, BSP1, JV4-1, JV41, MADH1, MADR1

Location

Chromosome 4: 146,446,872-146,461,121 forward strand.

About this transcript

This transcript has 2 exons, is associated with 5691 variant alleles and maps to 126 oligo probes.

Gene

This transcript is a product of gene ENSG00000170365.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000515385.1	SMAD1-002	2085	465aa	ENSP00000426568.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3765	D6RAY1 D6RBH9 D6RD62 D6RDN7 D6REQ3 Q15797	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000302085.4	SMAD1-001	1966	465aa	ENSP00000305769.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3765	D6RAY1 D6RBH9 D6RD62 D6RDN7 D6REQ3 Q15797	NM_005900.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394092.2	SMAD1-015	1658	465aa	ENSP00000377652.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3765	D6RAY1 D6RBH9 D6RD62 D6RDN7 D6REQ3 Q15797	NM_001003688.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000512019.1	SMAD1-007	847	133aa	ENSP00000427002.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAY1 D6RBH9 D6RD62 D6RDN7 D6REQ3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000514778.1	SMAD1-003	616	106aa	ENSP00000424959.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAY1 D6RBH9 D6REQ3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000503324.1	SMAD1-006	573	58aa	ENSP00000422706.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBH9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000514831.1	SMAD1-005	569	112aa	ENSP00000425270.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAY1 D6RBH9 D6RDN7 D6REQ3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000507594.1	SMAD1-004	558	95aa	ENSP00000424649.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAY1 D6RBH9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000507367.1	SMAD1-012	421	10aa	ENSP00000421601.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000515527.1	SMAD1-016	632	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000510948.1	SMAD1-018	569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000514168.1	SMAD1-013	548	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000506626.1	SMAD1-017	518	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000502342.1	SMAD1-011	262	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000511125.1	SMAD1-014	3293	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000511255.1	SMAD1-019	539	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 262 bps,

Version

ENST00000502342.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000365474 (version 1)

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Transcript: ENST00000502342.1 SMAD1-011

Summary