Transcript: ENST00000573989.1 TRAPPC1-005

Description

trafficking protein particle complex 1 [Source:HGNC Symbol;Acc:19894]

Gene Synonyms

BET5, MUM2

Location

Chromosome 17: 7,834,646-7,835,235 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 317 variant alleles and maps to 321 oligo probes.

Gene

This transcript is a product of gene ENSG00000170043.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000303731.4	TRAPPC1-001	811	145aa	ENSP00000302783.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11125	I3L3S0 I3L3V5 Q9Y5R8	NM_021210.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540486.1	TRAPPC1-201	759	145aa	ENSP00000441130.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11125	I3L3S0 I3L3V5 Q9Y5R8	NM_001166621.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000572656.1	TRAPPC1-002	409	75aa	ENSP00000460761.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L3V5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000571947.1	TRAPPC1-006	306	95aa	ENSP00000460674.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L3S0 I3L3V5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000571739.1	TRAPPC1-003	648	42aa	ENSP00000459045.1	Nonsense mediated decay		I3L1R8	-	-
ENST00000575639.1	TRAPPC1-004	561	42aa	ENSP00000460702.1	Nonsense mediated decay		I3L1R8	-	-
ENST00000573989.1	TRAPPC1-005	436	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 436 bps,

Version

ENST00000573989.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000440864 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000573989.1 TRAPPC1-005

Summary