Transcript: ENST00000303731.4 TRAPPC1-001

Description

trafficking protein particle complex 1 [Source:HGNC Symbol;Acc:19894]

Gene Synonyms

BET5, MUM2

Location

Chromosome 17: 7,833,667-7,835,263 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 847 variant alleles and maps to 360 oligo probes.

Gene

This transcript is a product of gene ENSG00000170043.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000303731.4	TRAPPC1-001	811	145aa	ENSP00000302783.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11125	I3L3S0 I3L3V5 Q9Y5R8	NM_021210.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540486.1	TRAPPC1-201	759	145aa	ENSP00000441130.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11125	I3L3S0 I3L3V5 Q9Y5R8	NM_001166621.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000572656.1	TRAPPC1-002	409	75aa	ENSP00000460761.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L3V5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000571947.1	TRAPPC1-006	306	95aa	ENSP00000460674.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L3S0 I3L3V5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000571739.1	TRAPPC1-003	648	42aa	ENSP00000459045.1	Nonsense mediated decay		I3L1R8	-	-
ENST00000575639.1	TRAPPC1-004	561	42aa	ENSP00000460702.1	Nonsense mediated decay		I3L1R8	-	-
ENST00000573989.1	TRAPPC1-005	436	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 811 bps, Translation length: 145 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y5R8

CCDS

This transcript is a member of the Human CCDS set: CCDS11125

Version

ENST00000303731.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000226975 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000303731.4 TRAPPC1-001

Summary