Transcript: ENST00000299565.5 CHRNA5-001

Description

cholinergic receptor, nicotinic, alpha 5 (neuronal) [Source:HGNC Symbol;Acc:1959]

Gene Synonyms

LNCR2, NACHRA5

Location

About this transcript

This transcript has 6 exons, is annotated with 27 domains and features, is associated with 12824 variant alleles and maps to 437 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000299565.5	CHRNA5-001	3623	468aa	ENSP00000299565.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10304	P30532 Q6EWN4	NM_000745.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559554.1	CHRNA5-003	1051	160aa	ENSP00000453519.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YM98	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559576.1	CHRNA5-004	755	56aa	ENSP00000452641.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000394802.4	CHRNA5-002	705	182aa	ENSP00000378281.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 3,623 bps, Translation length: 468 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P30532

CCDS

This transcript is a member of the Human CCDS set: CCDS10304

Version

ENST00000299565.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000290106 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.