Transcript: ENST00000380313.1 CA5B-001

Description

carbonic anhydrase VB, mitochondrial [Source:HGNC Symbol;Acc:1378]

Gene Synonyms

CA-VB

Location

Chromosome X: 15,768,043-15,781,167 forward strand.

About this transcript

This transcript has 2 exons, is associated with 4352 variant alleles and maps to 82 oligo probes.

Gene

This transcript is a product of gene ENSG00000169239.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000318636.3	CA5B-005	6050	317aa	ENSP00000314099.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14171	C9IZP3 C9JA11 Q9Y2D0	NM_007220.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454127.2	CA5B-201	2205	317aa	ENSP00000417021.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14171	C9IZP3 C9JA11 Q9Y2D0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000479740.1	CA5B-007	529	136aa	ENSP00000417553.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZP3 C9JA11	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000498004.1	CA5B-009	488	76aa	ENSP00000418622.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZP3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000478341.1	CA5B-002	517	70aa	ENSP00000417236.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000380313.1	CA5B-001	510	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000380319.2	CA5B-004	652	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478923.1	CA5B-006	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474624.1	CA5B-008	565	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000496188.1	CA5B-010	515	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 510 bps,

Version

ENST00000380313.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000055885 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000380313.1 CA5B-001

Summary