Transcript: ENST00000303127.7 LMAN2-001

Description

lectin, mannose-binding 2 [Source:HGNC Symbol;Acc:16986]

Gene Synonyms

C5orf8, GP36B, VIP36

Location

Chromosome 5: 176,758,563-176,778,853 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 10 domains and features, is associated with 10072 variant alleles and maps to 518 oligo probes.

Gene

This transcript is a product of gene ENSG00000169223.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000303127.7	LMAN2-001	1800	356aa	ENSP00000303366.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4417	B4DWN1 D6RIU4 Q12907	NM_006816.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000515209.1	LMAN2-008	1149	325aa	ENSP00000423998.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBV2 D6RIU4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000502560.1	LMAN2-005	876	288aa	ENSP00000425229.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RDX1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000513877.1	LMAN2-002	823	191aa	ENSP00000427377.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RIU4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000514458.1	LMAN2-007	616	203aa	ENSP00000424132.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBH1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000506310.1	LMAN2-004	564	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000502721.1	LMAN2-003	639	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000504071.1	LMAN2-006	562	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,800 bps, Translation length: 356 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q12907

CCDS

This transcript is a member of the Human CCDS set: CCDS4417

Version

ENST00000303127.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000253434 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000303127.7 LMAN2-001

Summary