Transcript: ENST00000487292.1 JMJD7-PLA2G4B-006

Description

JMJD7-PLA2G4B readthrough [Source:HGNC Symbol;Acc:34449]

Gene Synonyms

HsT16992, cPLA2-beta

Location

Chromosome 15: 42,128,983-42,140,341 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 6 domains and features, is associated with 7378 variant alleles and maps to 727 oligo probes.

Gene

This transcript is a product of gene ENSG00000168970.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000382448.4	JMJD7-PLA2G4B-001	3331	1012aa	ENSP00000371886.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32202	C9K0I3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000342159.4	JMJD7-PLA2G4B-002	2966	893aa	ENSP00000342785.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55961	C9K0I3	NM_001198588.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000487292.1	JMJD7-PLA2G4B-006	3178	81aa	ENSP00000424127.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000476036.1	JMJD7-PLA2G4B-003	580	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491746.1	JMJD7-PLA2G4B-004	7227	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490848.1	JMJD7-PLA2G4B-005	7218	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 2, Transcript length: 3,178 bps, Translation length: 81 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000487292.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000326085 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000487292.1 JMJD7-PLA2G4B-006

Summary