Transcript: ENST00000505676.1 TRAPPC11-003

Description

trafficking protein particle complex 11 [Source:HGNC Symbol;Acc:25751]

Gene Synonyms

C4orf41, FLJ12716, FOIGR, GRY, LGMD2S, foigr, gry

Location

Chromosome 4: 184,580,529-184,634,176 forward strand.

About this transcript

This transcript has 19 exons, is annotated with 1 domain and feature, is associated with 23657 variant alleles and maps to 522 oligo probes.

Gene

This transcript is a product of gene ENSG00000168538.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000334690.6	TRAPPC11-001	4552	1133aa	ENSP00000335371.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34112	Q7Z392	NM_021942.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357207.4	TRAPPC11-201	4406	1086aa	ENSP00000349738.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47166	Q7Z392	NM_199053.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000512476.1	TRAPPC11-004	2546	739aa	ENSP00000421004.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RHE5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000505676.1	TRAPPC11-003	2244	124aa	ENSP00000422915.1	Nonsense mediated decay		D6R9T9	-	-
ENST00000511409.1	TRAPPC11-008	568	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000504526.1	TRAPPC11-006	503	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000511955.1	TRAPPC11-005	2342	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000509857.1	TRAPPC11-009	548	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000513600.1	TRAPPC11-007	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506426.1	TRAPPC11-010	395	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 5, Transcript length: 2,244 bps, Translation length: 124 residues

Version

ENST00000505676.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000361656 (version 1)

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Transcript: ENST00000505676.1 TRAPPC11-003

Summary