Transcript: ENST00000536000.1 VPS37C-004

Description

vacuolar protein sorting 37 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:26097]

Gene Synonyms

FLJ20847, PML39

Location

About this transcript

This transcript has 4 exons, is associated with 12618 variant alleles and maps to 220 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000301765.5	VPS37C-001	2865	355aa	ENSP00000301765.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31573	A5D8V6 F5H4Q5	NM_017966.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538036.1	VPS37C-003	506	148aa	ENSP00000446013.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4Q5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000536000.1	VPS37C-004	915	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535818.1	VPS37C-002	865	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 915 bps,

Version

ENST00000536000.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000396471 (version 1)