Transcript: ENST00000577016.1 TRPV3-007

Description

transient receptor potential cation channel, subfamily V, member 3 [Source:HGNC Symbol;Acc:18084]

Gene Synonyms

OLMS, VRL3

Location

Chromosome 17: 3,416,484-3,432,282 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 6 domains and features, is associated with 8931 variant alleles and maps to 281 oligo probes.

Gene

This transcript is a product of gene ENSG00000167723.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000301365.4	TRPV3-002	3235	791aa	ENSP00000301365.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58500	Q8NET8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000572519.1	TRPV3-003	2937	765aa	ENSP00000460215.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8NET8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000576742.1	TRPV3-001	2766	790aa	ENSP00000461518.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11029	B3KXH2 B3KXP7 Q8NET8	NM_145068.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381913.4	TRPV3-009	5050	339aa	ENSP00000371338.4	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000573539.1	TRPV3-004	2744	55aa	ENSP00000458239.1	Nonsense mediated decay		I3L0L5	-	-
ENST00000571139.1	TRPV3-005	2726	55aa	ENSP00000458187.1	Nonsense mediated decay		I3L0L5	-	-
ENST00000577016.1	TRPV3-007	1621	146aa	ENSP00000460856.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000574773.1	TRPV3-006	2773	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000575865.1	TRPV3-010	675	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000571005.1	TRPV3-011	547	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 4, Transcript length: 1,621 bps, Translation length: 146 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000577016.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs12946883, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) ESP6500:African_American, ESP6500:European_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000438244 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

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Transcript: ENST00000577016.1 TRPV3-007

Summary