Transcript: ENST00000337979.4 STX3-001

Description

syntaxin 3 [Source:HGNC Symbol;Acc:11438]

Gene Synonyms

STX3A

Location

Chromosome 11: 59,522,532-59,570,179 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 15 domains and features, is associated with 19850 variant alleles and maps to 652 oligo probes.

Gene

This transcript is a product of gene ENSG00000166900.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000337979.4	STX3-001	3299	289aa	ENSP00000338562.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7975	E9PN33 F8W9Y0 Q13277 Q53YE2	NM_004177.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535361.1	STX3-203	6363	252aa	ENSP00000441649.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q13277	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000300150.7	STX3-201	3231	258aa	ENSP00000300150.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PN33 F8W9Y0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000529177.1	STX3-004	1571	277aa	ENSP00000433248.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53637	Q13277	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437946.2	STX3-202	1024	180aa	ENSP00000393536.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ET77	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528805.1	STX3-003	615	204aa	ENSP00000431386.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q13277	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000530221.1	STX3-006	534	76aa	ENSP00000434836.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PN33	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000533637.1	STX3-002	1024	43aa	ENSP00000436200.1	Nonsense mediated decay		E9PQJ8	-	-
ENST00000530498.1	STX3-005	690	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 3,299 bps, Translation length: 289 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13277

CCDS

This transcript is a member of the Human CCDS set: CCDS7975

Version

ENST00000337979.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000394264 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000337979.4 STX3-001

Summary