Transcript: ENST00000570098.2 CHRFAM7A-006

Description

CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion [Source:HGNC Symbol;Acc:15781]

Gene Synonyms

CHRNA7, CHRNA7-DR1, D-10

Location

Chromosome 15: 30,679,147-30,686,023 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 1329 variant alleles and maps to 260 oligo probes.

Gene

This transcript is a product of gene ENSG00000166664.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000299847.2	CHRFAM7A-002	2393	412aa	ENSP00000299847.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32184	H3BPP0 Q494W8 Q693P7	NM_139320.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397827.3	CHRFAM7A-201	2794	321aa	ENSP00000380927.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42008	Q693P7	NM_148911.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000401522.3	CHRFAM7A-001	1913	321aa	ENSP00000385389.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42008	Q693P7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562729.1	CHRFAM7A-004	573	104aa	ENSP00000455401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPP0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000567722.1	CHRFAM7A-003	689	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000570098.2	CHRFAM7A-006	316	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000569278.1	CHRFAM7A-005	464	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 316 bps,

Version

ENST00000570098.2

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000430705 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000570098.2 CHRFAM7A-006

Summary