Transcript: ENST00000401522.3 CHRFAM7A-001

Description

CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion [Source:HGNC Symbol;Acc:15781]

Gene Synonyms

CHRNA7, CHRNA7-DR1, D-10

Location

Chromosome 15: 30,654,261-30,685,563 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 17 domains and features, is associated with 8695 variant alleles and maps to 985 oligo probes.

Gene

This transcript is a product of gene ENSG00000166664.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000299847.2	CHRFAM7A-002	2393	412aa	ENSP00000299847.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32184	H3BPP0 Q494W8 Q693P7	NM_139320.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397827.3	CHRFAM7A-201	2794	321aa	ENSP00000380927.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42008	Q693P7	NM_148911.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000401522.3	CHRFAM7A-001	1913	321aa	ENSP00000385389.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42008	Q693P7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562729.1	CHRFAM7A-004	573	104aa	ENSP00000455401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPP0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000567722.1	CHRFAM7A-003	689	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000570098.2	CHRFAM7A-006	316	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000569278.1	CHRFAM7A-005	464	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 5, Transcript length: 1,913 bps, Translation length: 321 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS42008

Version

ENST00000401522.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000430701 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000401522.3 CHRFAM7A-001

Summary