Transcript: ENST00000446809.2 CLEC4E-003

Description

C-type lectin domain family 4, member E [Source:HGNC Symbol;Acc:14555]

Gene Synonyms

CLECSF9, MINCLE, mincle

Location

Chromosome 12: 8,691,550-8,693,497 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 1014 variant alleles and maps to 112 oligo probes.

Gene

This transcript is a product of gene ENSG00000166523.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000299663.3	CLEC4E-001	2159	219aa	ENSP00000299663.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8594	Q9ULY5	NM_014358.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545274.1	CLEC4E-005	730	174aa	ENSP00000443034.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H5X7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000446457.2	CLEC4E-004	701	92aa	ENSP00000387737.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WFA1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537698.1	CLEC4E-006	420	94aa	ENSP00000443328.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000450725.2	CLEC4E-002	566	92aa	ENSP00000404994.2	Nonsense mediated decay		F8WFA1	-	-
ENST00000446809.2	CLEC4E-003	587	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 587 bps,

Version

ENST00000446809.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000400571 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000446809.2 CLEC4E-003

Summary