Transcript: ENST00000299663.3 CLEC4E-001

Description

C-type lectin domain family 4, member E [Source:HGNC Symbol;Acc:14555]

Gene Synonyms

CLECSF9, MINCLE, mincle

Location

Chromosome 12: 8,685,901-8,693,559 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 3555 variant alleles and maps to 418 oligo probes.

Gene

This transcript is a product of gene ENSG00000166523.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000299663.3	CLEC4E-001	2159	219aa	ENSP00000299663.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8594	Q9ULY5	NM_014358.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545274.1	CLEC4E-005	730	174aa	ENSP00000443034.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H5X7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000446457.2	CLEC4E-004	701	92aa	ENSP00000387737.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WFA1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537698.1	CLEC4E-006	420	94aa	ENSP00000443328.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000450725.2	CLEC4E-002	566	92aa	ENSP00000404994.2	Nonsense mediated decay		F8WFA1	-	-
ENST00000446809.2	CLEC4E-003	587	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,159 bps, Translation length: 219 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9ULY5

CCDS

This transcript is a member of the Human CCDS set: CCDS8594

Version

ENST00000299663.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000400566 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000299663.3 CLEC4E-001

Summary