Transcript: ENST00000373202.3 SGPL1-001

Description

sphingosine-1-phosphate lyase 1 [Source:HGNC Symbol;Acc:10817]

Gene Synonyms

KIAA1252, S1PL, SPL

Location

About this transcript

This transcript has 15 exons, is annotated with 5 domains and features, is associated with 26210 variant alleles and maps to 741 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000373202.3	SGPL1-001	5745	568aa	ENSP00000362298.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31216	O95470	NM_003901.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000299297.4	SGPL1-004	658	202aa	ENSP00000299297.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BXL7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000409118.2	SGPL1-006	462	135aa	ENSP00000386549.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000486993.1	SGPL1-002	537	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 5,745 bps, Translation length: 568 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O95470

CCDS

This transcript is a member of the Human CCDS set: CCDS31216

Version

ENST00000373202.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000048533 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.