Transcript: ENST00000546618.1 SVOP-004

Description

SV2 related protein homolog (rat) [Source:HGNC Symbol;Acc:25417]

Gene Synonyms

DKFZp761H039

Location

Chromosome 12: 109,354,711-109,372,439 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 8 domains and features, is associated with 7004 variant alleles and maps to 42 oligo probes.

Gene

This transcript is a product of gene ENSG00000166111.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000299134.5	SVOP-001	3104	483aa	ENSP00000299134.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8N4V2	NM_018711.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000551683.1	SVOP-002	407	11aa	ENSP00000446523.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000546618.1	SVOP-004	271	90aa	ENSP00000447275.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000550490.1	SVOP-005	207	11aa	ENSP00000449132.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000550436.1	SVOP-003	344	39aa	ENSP00000447583.1	Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000550046.1	SVOP-006	207	11aa	ENSP00000448505.1	Nonsense mediated decay	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551211.1	SVOP-007	439	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000548229.1	SVOP-008	240	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000551429.1	SVOP-009	207	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 271 bps, Translation length: 90 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000546618.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000403985 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000546618.1 SVOP-004

Summary