Transcript: ENST00000393259.2 TAF1D-014

Description

TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa [Source:HGNC Symbol;Acc:28759]

Gene Synonyms

ACA1, ACA18, ACA32, ACA40, ACA8, JOSD3, MGC5306, MIRN1304, RAFI41, TAF(I)41, TAFI41, hsa-mir-1304, mgh28S-2410

Location

Chromosome 11: 93,463,447-93,469,907 reverse strand.

About this transcript

This transcript has 10 exons, is associated with 3352 variant alleles and maps to 403 oligo probes.

Gene

This transcript is a product of gene ENSG00000166012.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000448108.2	TAF1D-001	2082	278aa	ENSP00000410409.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8293	H0YG36 Q9H5J8	NM_024116.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000532455.1	TAF1D-007	565	110aa	ENSP00000431570.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000527690.1	TAF1D-024	335	8aa	ENSP00000432852.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000323981.2	TAF1D-002	2540	278aa	ENSP00000314971.2	Nonsense mediated decay	CCDS8293	H0YG36 Q9H5J8	-	-
ENST00000526015.1	TAF1D-004	1735	278aa	ENSP00000435087.1	Nonsense mediated decay	CCDS8293	H0YG36 Q9H5J8	-	-
ENST00000527169.1	TAF1D-003	1127	215aa	ENSP00000433119.1	Nonsense mediated decay		E9PM59	-	-
ENST00000534770.1	TAF1D-008	737	36aa	ENSP00000435304.1	Nonsense mediated decay		E9PKU8	-	-
ENST00000393259.2	TAF1D-014	547	44aa	ENSP00000376944.2	Nonsense mediated decay		H0Y3L3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000533794.1	TAF1D-013	505	26aa	ENSP00000446311.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000540232.1	TAF1D-023	483	42aa	ENSP00000441633.1	Nonsense mediated decay		H0YG36	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000546088.1	TAF1D-015	1728	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000530089.2	TAF1D-019	1429	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532235.1	TAF1D-009	334	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000530769.1	TAF1D-005	4358	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000525928.1	TAF1D-020	1710	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000529794.1	TAF1D-011	1123	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000529900.1	TAF1D-022	1066	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000527068.1	TAF1D-010	1023	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000529435.1	TAF1D-016	1011	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000528734.1	TAF1D-017	664	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000534079.1	TAF1D-021	656	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000529508.1	TAF1D-006	538	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 4, Transcript length: 547 bps, Translation length: 44 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000393259.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000394651 (version 2)

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Transcript: ENST00000393259.2 TAF1D-014

Summary