Transcript: ENST00000528336.1 PCF11-007

Description

PCF11 cleavage and polyadenylation factor subunit [Source:HGNC Symbol;Acc:30097]

Gene Synonyms

KIAA0824

Location

Chromosome 11: 82,891,464-82,894,101 forward strand.

About this transcript

This transcript has 4 exons, is associated with 1068 variant alleles and maps to 103 oligo probes.

Gene

This transcript is a product of gene ENSG00000165494.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000298281.4	PCF11-001	7677	1555aa	ENSP00000298281.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44689	E9PKN0 O94913	NM_015885.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000530660.1	PCF11-003	3309	998aa	ENSP00000434540.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z7X4 E9PQ01	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000530304.1	PCF11-002	2649	784aa	ENSP00000431567.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PKN0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000530906.1	PCF11-006	628	198aa	ENSP00000437076.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PNY7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000533018.1	PCF11-005	580	99aa	ENSP00000436806.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PQF9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000528336.1	PCF11-007	1041	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,041 bps,

Version

ENST00000528336.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000392554 (version 1)

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Transcript: ENST00000528336.1 PCF11-007

Summary