Transcript: ENST00000474388.1 TRPV6-009

Description

transient receptor potential cation channel, subfamily V, member 6 [Source:HGNC Symbol;Acc:14006]

Gene Synonyms

ABP/ZF, CAT1, CATL, CaT1, ECAC2, HSA277909, LP6728, ZFAB

Location

Chromosome 7: 142,573,867-142,574,561 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 422 variant alleles and maps to 150 oligo probes.

Gene

This transcript is a product of gene ENSG00000165125.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000359396.3	TRPV6-001	2928	725aa	ENSP00000352358.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5874	C9J9W0 Q8NBV5 Q9H1D0 Q9NXZ3	NM_018646.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436401.1	TRPV6-006	532	122aa	ENSP00000411100.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J9W0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000431833.1	TRPV6-007	247	56aa	ENSP00000415917.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JHY1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000487077.1	TRPV6-005	10425	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485138.1	TRPV6-003	3032	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463646.1	TRPV6-004	2406	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489123.1	TRPV6-008	673	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474388.1	TRPV6-009	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 540 bps,

Version

ENST00000474388.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000347670 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000474388.1 TRPV6-009

Summary