Transcript: ENST00000498653.1 FXN-003

Description

frataxin [Source:HGNC Symbol;Acc:3951]

Gene Synonyms

CyaY, FA, FARR, FRDA, X25

Location

Chromosome 9: 71,651,077-71,688,021 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 14 domains and features, is associated with 16128 variant alleles and maps to 276 oligo probes.

Gene

This transcript is a product of gene ENSG00000165060.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000377270.3	FXN-001	2608	210aa	ENSP00000366482.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6626	C9JAX1 Q16595	NM_000144.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396364.3	FXN-201	980	171aa	ENSP00000379650.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55313	Q16595	NM_001161706.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396366.2	FXN-004	922	196aa	ENSP00000379652.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43834	Q16595	NM_181425.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000498653.1	FXN-003	856	135aa	ENSP00000418015.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JAX1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000484259.1	FXN-005	359	108aa	ENSP00000419243.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 856 bps, Translation length: 135 residues

Version

ENST00000498653.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000355968 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000498653.1 FXN-003

Summary