Transcript: ENST00000296581.5 LSM6-001

Description

LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17017]

Gene Synonyms

YDR378C

Location

Chromosome 4: 147,096,837-147,111,196 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 6241 variant alleles and maps to 300 oligo probes.

Gene

This transcript is a product of gene ENSG00000164167.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000502781.1	LSM6-002	1352	80aa	ENSP00000422392.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3767	P62312	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000296581.5	LSM6-001	768	80aa	ENSP00000296581.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3767	P62312	NM_007080.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504181.1	LSM6-005	549	80aa	ENSP00000420929.1	Nonsense mediated decay	CCDS3767	P62312	-	-
ENST00000515311.1	LSM6-007	545	80aa	ENSP00000427036.1	Nonsense mediated decay	CCDS3767	P62312	-	-
ENST00000503982.1	LSM6-003	820	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000510331.1	LSM6-004	561	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000507449.1	LSM6-006	371	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 768 bps, Translation length: 80 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P62312

CCDS

This transcript is a member of the Human CCDS set: CCDS3767

Version

ENST00000296581.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000364928 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000296581.5 LSM6-001

Summary