Transcript: ENST00000296474.3 MST1R-001

Description

macrophage stimulating 1 receptor (c-met-related tyrosine kinase) [Source:HGNC Symbol;Acc:7381]

Gene Synonyms

CD136, CDw136, PTK8, RON

Location

Chromosome 3: 49,924,435-49,941,070 reverse strand.

About this transcript

This transcript has 20 exons, is annotated with 45 domains and features, is associated with 10033 variant alleles and maps to 738 oligo probes.

Gene

This transcript is a product of gene ENSG00000164078.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000296474.3	MST1R-001	4536	1400aa	ENSP00000296474.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2807	Q04912	NM_002447.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000344206.4	MST1R-002	4198	1351aa	ENSP00000341325.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58833	Q04912	NM_001244937.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000434765.1	MST1R-011	854	285aa	ENSP00000393294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000440292.1	MST1R-010	810	270aa	ENSP00000414792.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000411578.2	MST1R-007	4683	1032aa	ENSP00000407926.2	Nonsense mediated decay		J3KQS7	-	-
ENST00000468525.1	MST1R-006	2727	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485044.1	MST1R-005	1944	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493535.1	MST1R-004	1626	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000497001.1	MST1R-003	1488	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463789.1	MST1R-013	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467110.1	MST1R-009	542	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490053.1	MST1R-012	341	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 4,536 bps, Translation length: 1,400 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q04912

CCDS

This transcript is a member of the Human CCDS set: CCDS2807

Version

ENST00000296474.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000345403 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000296474.3 MST1R-001

Summary