Transcript: ENST00000489418.1 SLBP-001

Description

stem-loop binding protein [Source:HGNC Symbol;Acc:10904]

Gene Synonyms

HBP

Location

Chromosome 4: 1,694,527-1,714,282 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 7 domains and features, is associated with 10848 variant alleles and maps to 440 oligo probes.

Gene

This transcript is a product of gene ENSG00000163950.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000489418.1	SLBP-001	1977	270aa	ENSP00000417686.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3350	B3KSC5 Q14493 Q53XR2	NM_006527.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000318386.4	SLBP-004	1635	277aa	ENSP00000316490.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W8D3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429429.2	SLBP-002	1623	231aa	ENSP00000406322.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KSC5 Q14493	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483348.1	SLBP-007	1030	225aa	ENSP00000426891.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000488267.1	SLBP-003	987	235aa	ENSP00000418658.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EUV9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000480936.1	SLBP-006	558	186aa	ENSP00000417359.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,977 bps, Translation length: 270 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14493

CCDS

This transcript is a member of the Human CCDS set: CCDS3350

Version

ENST00000489418.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000203176 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000489418.1 SLBP-001

Summary