Transcript: ENST00000395761.3 CXCL1-001

Description

chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) [Source:HGNC Symbol;Acc:4602]

Gene Synonyms

FSP, GRO, GRO1, GROA, GROa, MGSA, MGSA-a, NAP-3, SCYB1

Location

About this transcript

This transcript has 4 exons, is annotated with 16 domains and features, is associated with 1043 variant alleles and maps to 330 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000395761.3	CXCL1-001	1097	107aa	ENSP00000379110.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47074	P09341 Q6LD34	NM_001511.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509101.1	CXCL1-002	574	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,097 bps, Translation length: 107 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P09341

CCDS

This transcript is a member of the Human CCDS set: CCDS47074

Version

ENST00000395761.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000362734 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.