Transcript: ENST00000342820.6 PAQR3-003

Description

progestin and adipoQ receptor family member III [Source:HGNC Symbol;Acc:30130]

Gene Synonyms

RKTG

Location

Chromosome 4: 79,808,281-79,860,548 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 10 domains and features, is associated with 21052 variant alleles and maps to 515 oligo probes.

Gene

This transcript is a product of gene ENSG00000163291.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000512733.1	PAQR3-001	9811	311aa	ENSP00000421981.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34020	Q6TCH7	NM_001040202.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000295462.3	PAQR3-201	1964	88aa	ENSP00000295462.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6TCH7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380645.4	PAQR3-202	1055	291aa	ENSP00000370019.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W784	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395594.2	PAQR3-002	3995	269aa	ENSP00000378959.2	Nonsense mediated decay		Q6TCH7	-	-
ENST00000515853.1	PAQR3-006	3370	88aa	ENSP00000422357.1	Nonsense mediated decay		Q6TCH7	-	-
ENST00000511594.1	PAQR3-005	2288	311aa	ENSP00000425080.1	Nonsense mediated decay	CCDS34020	Q6TCH7	-	-
ENST00000342820.6	PAQR3-003	2153	291aa	ENSP00000344203.6	Nonsense mediated decay		F8W784	-	-
ENST00000512760.1	PAQR3-004	1431	88aa	ENSP00000426875.1	Nonsense mediated decay		Q6TCH7	-	-
ENST00000508599.1	PAQR3-007	549	68aa	ENSP00000420848.1	Nonsense mediated decay		D6RDU4	-	-
ENST00000515541.1	PAQR3-010	804	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000512299.1	PAQR3-008	597	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000503343.1	PAQR3-011	487	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505735.1	PAQR3-009	570	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000505715.1	PAQR3-012	520	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 6, Transcript length: 2,153 bps, Translation length: 291 residues

Version

ENST00000342820.6

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000363444 (version 1)

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Transcript: ENST00000342820.6 PAQR3-003

Summary