Transcript: ENST00000295314.4 TMOD4-001

Description

tropomodulin 4 (muscle) [Source:HGNC Symbol;Acc:11874]

Gene Synonyms

SK-TMOD, Sk-Tmod

Location

Chromosome 1: 151,142,463-151,148,492 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 9 domains and features, is associated with 2761 variant alleles and maps to 367 oligo probes.

Gene

This transcript is a product of gene ENSG00000163157.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000295314.4	TMOD4-001	1267	345aa	ENSP00000295314.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS988	Q5JR82 Q9NZQ9	NM_013353.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENST00000416280.2	TMOD4-201	1024	276aa	ENSP00000414180.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z6N9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441701.1	TMOD4-005	493	142aa	ENSP00000406333.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JR82	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000466891.1	TMOD4-004	441	123aa	ENSP00000468006.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000463543.1	TMOD4-002	1183	43aa	ENSP00000468489.1	Nonsense mediated decay		K7ES04	-	-
ENST00000601585.1	TMOD4-007	668	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488488.1	TMOD4-006	613	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,267 bps, Translation length: 345 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NZQ9

CCDS

This transcript is a member of the Human CCDS set: CCDS988

Version

ENST00000295314.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs35954676, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-LWK, CSHL-HAPMAP:HAPMAP-ASW, CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HapMap-YRI.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000034419 (version 1)

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Recent locations

Transcript: ENST00000295314.4 TMOD4-001

Summary