Transcript: ENST00000483930.1 CTSS-003

Description

cathepsin S [Source:HGNC Symbol;Acc:2545]

Location

Chromosome 1: 150,705,314-150,724,310 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 6 domains and features, is associated with 7418 variant alleles and maps to 289 oligo probes.

Gene

This transcript is a product of gene ENSG00000163131.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368985.3	CTSS-001	4107	331aa	ENSP00000357981.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS968	P25774	NM_004079.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448301.2	CTSS-006	1421	281aa	ENSP00000408414.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55634	P25774	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483930.1	CTSS-003	752	117aa	ENSP00000475812.1	Nonsense mediated decay		U3KQE7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000472977.2	CTSS-004	673	96aa	ENSP00000475176.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000607427.1	CTSS-005	390	5aa	ENSP00000475557.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000480760.1	CTSS-002	650	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 752 bps, Translation length: 117 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000483930.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000084739 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000483930.1 CTSS-003

Summary