Transcript: ENST00000506357.1 SGCB-002

Description

sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) [Source:HGNC Symbol;Acc:10806]

Gene Synonyms

A3b, LGMD2E, SGC

Location

About this transcript

This transcript has 5 exons, is annotated with 3 domains and features, is associated with 4599 variant alleles and maps to 168 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381431.5	SGCB-001	4431	318aa	ENSP00000370839.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3488	Q16585 Q5U0N0	NM_000232.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535450.1	SGCB-201	2645	248aa	ENSP00000441199.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z635	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506357.1	SGCB-002	663	100aa	ENSP00000421235.1	Nonsense mediated decay		H0YA15	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000514133.1	SGCB-003	599	93aa	ENSP00000425818.1	Nonsense mediated decay		H0YA15	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 663 bps, Translation length: 100 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000506357.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000361452 (version 1)