Transcript: ENST00000430495.1 PUS10-005

Description

pseudouridylate synthase 10 [Source:HGNC Symbol;Acc:26505]

Gene Synonyms

CCDC139, DOBI, FLJ32312

Location

Chromosome 2: 61,235,916-61,244,328 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 1 domain and feature, is associated with 4028 variant alleles and maps to 93 oligo probes.

Gene

This transcript is a product of gene ENSG00000162927.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000316752.6	PUS10-001	2278	529aa	ENSP00000326003.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1865	C9JNL8 Q3MIT2	NM_144709.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000407787.1	PUS10-004	1820	529aa	ENSP00000386074.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1865	C9JNL8 Q3MIT2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000398658.2	PUS10-002	1227	62aa	ENSP00000381651.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MUL8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421319.1	PUS10-003	571	120aa	ENSP00000402185.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JNL8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000430495.1	PUS10-005	658	62aa	ENSP00000403880.1	Nonsense mediated decay		A8MUL8	-	-
ENST00000602599.1	PUS10-006	6366	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 658 bps, Translation length: 62 residues

Version

ENST00000430495.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000325735 (version 2)

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Transcript: ENST00000430495.1 PUS10-005

Summary