Transcript: ENST00000464547.1 ATF3-003

Description

activating transcription factor 3 [Source:HGNC Symbol;Acc:785]

Location

Chromosome 1: 212,788,364-212,792,897 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 12 domains and features, is associated with 1940 variant alleles and maps to 293 oligo probes.

Gene

This transcript is a product of gene ENSG00000162772.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000341491.4	ATF3-001	2033	181aa	ENSP00000344352.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1506	P18847 Q5VTZ4	NM_001674.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366987.2	ATF3-201	1896	181aa	ENSP00000355954.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1506	P18847 Q5VTZ4	NM_001030287.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366983.1	ATF3-004	858	135aa	ENSP00000355950.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41464	P18847 Q8NG55	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366981.4	ATF3-002	680	175aa	ENSP00000355948.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VTZ4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000366985.1	ATF3-007	516	124aa	ENSP00000355952.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58059	P18847	NM_001206484.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000336937.4	ATF3-006	482	106aa	ENSP00000336908.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55688	P18847 Q8NG55	NM_001206486.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000464547.1	ATF3-003	767	135aa	ENSP00000432208.1	Nonsense mediated decay	CCDS41464	P18847 Q8NG55	-	-
ENST00000492118.1	ATF3-008	2117	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465155.1	ATF3-005	1626	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 767 bps, Translation length: 135 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P18847

CCDS

This transcript is a member of the Human CCDS set: CCDS41464

Version

ENST00000464547.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000089298 (version 3)

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Transcript: ENST00000464547.1 ATF3-003

Summary