Transcript: ENST00000603679.1 VCAM1-005

Description

vascular cell adhesion molecule 1 [Source:HGNC Symbol;Acc:12663]

Gene Synonyms

CD106, INCAM-100, L1CAM

Location

Chromosome 1: 101,200,731-101,204,595 forward strand.

About this transcript

This transcript has 1 exon, is associated with 1548 variant alleles and maps to 249 oligo probes.

Gene

This transcript is a product of gene ENSG00000162692.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000294728.2	VCAM1-001	3083	739aa	ENSP00000294728.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS773	F2YYR6 F8UU18 F8UV74 G0ZFQ0 G0ZI12 P19320 Q68DC4	NM_001078.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000347652.2	VCAM1-002	2812	647aa	ENSP00000304611.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS774	F8UU18 F8UV74 G0ZFQ0 G0ZI12 P19320 Q68DC4	NM_080682.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370119.4	VCAM1-004	2483	677aa	ENSP00000359137.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55617	F2YYR6 F8UU18 F8UV74 G0ZFQ0 P19320 Q68DC4	NM_001199834.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370115.1	VCAM1-003	2475	540aa	ENSP00000359133.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PDD2 F8UV74 G0ZFQ0 G0ZI12 Q68DC4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000603679.1	VCAM1-005	3865	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 1, Coding exons: 0, Transcript length: 3,865 bps,

Version

ENST00000603679.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000468890 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000603679.1 VCAM1-005

Summary