Transcript: ENST00000336798.7 SDC3-001

Description

syndecan 3 [Source:HGNC Symbol;Acc:10660]

Gene Synonyms

KIAA0468, N-syndecan, SDCN, SYND3

Location

About this transcript

This transcript has 3 exons, is annotated with 13 domains and features, is associated with 4565 variant alleles and maps to 455 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000339394.6	SDC3-002	1580	442aa	ENSP00000344468.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30661	O75056	NM_014654.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000336798.7	SDC3-001	6392	384aa	ENSP00000338346.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3DPN2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000471567.1	SDC3-003	589	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487984.1	SDC3-004	355	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 6,392 bps, Translation length: 384 residues

Version

ENST00000336798.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000102016 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.