Transcript: ENST00000575168.1 CXCL16-005

Description

chemokine (C-X-C motif) ligand 16 [Source:HGNC Symbol;Acc:16642]

Gene Synonyms

CXCLG16, SCYB16, SR-PSOX, SRPSOX

Location

Chromosome 17: 4,637,878-4,641,834 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 1866 variant alleles and maps to 228 oligo probes.

Gene

This transcript is a product of gene ENSG00000161921.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000293778.6	CXCL16-001	2222	273aa	ENSP00000293778.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11052	I3L333 Q9H2A7	NM_022059.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000574412.1	CXCL16-002	1668	273aa	ENSP00000459592.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11052	I3L333 Q9H2A7	NM_001100812.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000573123.1	CXCL16-004	589	93aa	ENSP00000460145.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L333	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000576153.1	CXCL16-003	1484	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000575168.1	CXCL16-005	619	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 619 bps,

Version

ENST00000575168.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000439578 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000575168.1 CXCL16-005

Summary