Transcript: ENST00000293760.5 LEMD2-001

Description

LEM domain containing 2 [Source:HGNC Symbol;Acc:21244]

Gene Synonyms

NET25, dJ482C21.1

Location

Chromosome 6: 33,738,979-33,756,913 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 14 domains and features, is associated with 7996 variant alleles and maps to 514 oligo probes.

Gene

This transcript is a product of gene ENSG00000161904.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000293760.5	LEMD2-001	2958	503aa	ENSP00000293760.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4785	D6R958 D6RBV0 Q8NC56	NM_181336.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506578.1	LEMD2-013	1684	85aa	ENSP00000423715.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y9B7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000508327.1	LEMD2-004	1306	201aa	ENSP00000421704.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47411	D6R958 Q8NC56	NM_001143944.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000442696.2	LEMD2-002	839	280aa	ENSP00000408524.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R958	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000504692.1	LEMD2-012	643	102aa	ENSP00000421112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000513701.1	LEMD2-005	555	53aa	ENSP00000423619.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R958	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000421671.2	LEMD2-003	2323	114aa	ENSP00000398733.2	Nonsense mediated decay		D6RBV0	-	-
ENST00000502643.1	LEMD2-010	583	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000511171.1	LEMD2-008	4870	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000513832.1	LEMD2-009	821	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000510598.1	LEMD2-011	563	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512368.1	LEMD2-006	544	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000514636.1	LEMD2-007	544	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,958 bps, Translation length: 503 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NC56

CCDS

This transcript is a member of the Human CCDS set: CCDS4785

Version

ENST00000293760.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000040209 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000293760.5 LEMD2-001

Summary