Transcript: ENST00000593136.1 RAVER1-005

Description

ribonucleoprotein, PTB-binding 1 [Source:HGNC Symbol;Acc:30296]

Gene Synonyms

KIAA1978

Location

About this transcript

This transcript has 7 exons, is annotated with 4 domains and features, is associated with 2465 variant alleles and maps to 126 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000293677.6	RAVER1-001	3595	756aa	ENSP00000293677.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45960	E9PAU2 K7EQG2	NM_133452.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000585935.1	RAVER1-006	470	156aa	ENSP00000465532.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKA4	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000591969.1	RAVER1-004	742	96aa	ENSP00000465753.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000593136.1	RAVER1-005	500	130aa	ENSP00000468375.1	Nonsense mediated decay		K7ERR4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000592208.1	RAVER1-003	4693	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 5, Transcript length: 500 bps, Translation length: 130 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000593136.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000451230 (version 1)