Transcript: ENST00000293275.3 CCL16-001

Description

chemokine (C-C motif) ligand 16 [Source:HGNC Symbol;Acc:10614]

Gene Synonyms

CKb12, HCC-4, ILINCK, LCC-1, LEC, LMC, Mtn-1, NCC-4, NCC4, SCYA16, SCYL4

Location

About this transcript

This transcript has 3 exons, is annotated with 9 domains and features, is associated with 2261 variant alleles and maps to 318 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000293275.3	CCL16-001	1506	120aa	ENSP00000293275.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11303	O15467	NM_004590.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586567.1	CCL16-004	1634	53aa	ENSP00000466279.1	Nonsense mediated decay		K7ELY7	-	-
ENST00000483259.1	CCL16-002	687	95aa	ENSP00000431339.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,506 bps, Translation length: 120 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15467

CCDS

This transcript is a member of the Human CCDS set: CCDS11303

Version

ENST00000293275.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256579 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.