Transcript: ENST00000469897.1 CPSF4-012

Description

cleavage and polyadenylation specific factor 4, 30kDa [Source:HGNC Symbol;Acc:2327]

Gene Synonyms

CPSF30, NAR, NEB1

Location

Chromosome 7: 99,051,310-99,054,293 forward strand.

About this transcript

This transcript has 2 exons, is associated with 1347 variant alleles and maps to 309 oligo probes.

Gene

This transcript is a product of gene ENSG00000160917.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000292476.5	CPSF4-003	1691	269aa	ENSP00000292476.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5664	C9K0K2 O95639	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436336.2	CPSF4-001	1738	244aa	ENSP00000395311.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47652	B7Z7B0 C9K0K2 O95639	NM_006693.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451876.1	CPSF4-002	1644	211aa	ENSP00000396060.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JEV9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441580.1	CPSF4-004	942	191aa	ENSP00000402224.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z7B0 C9K0K2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000412686.1	CPSF4-010	745	112aa	ENSP00000401150.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9K0K2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000452047.1	CPSF4-007	687	229aa	ENSP00000392584.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C016	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000440514.1	CPSF4-011	578	193aa	ENSP00000415188.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000430038.1	CPSF4-005	735	44aa	ENSP00000401496.1	Nonsense mediated decay		F8WEL7	-	-
ENST00000471455.1	CPSF4-008	569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465132.1	CPSF4-009	927	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484112.1	CPSF4-006	825	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469897.1	CPSF4-012	689	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482251.2	CPSF4-013	574	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 689 bps,

Version

ENST00000469897.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000336389 (version 1)

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Transcript: ENST00000469897.1 CPSF4-012

Summary