Transcript: ENST00000389567.4 ESYT3-001

Description

extended synaptotagmin-like protein 3 [Source:HGNC Symbol;Acc:24295]

Gene Synonyms

CHR3SYT, E-Syt3, FAM62C

Location

Chromosome 3: 138,153,455-138,197,256 forward strand.

About this transcript

This transcript has 23 exons, is annotated with 25 domains and features, is associated with 18943 variant alleles and maps to 667 oligo probes.

Gene

This transcript is a product of gene ENSG00000158220.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389567.4	ESYT3-001	4407	886aa	ENSP00000374218.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3101	A0FGR9	NM_031913.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000289135.4	ESYT3-003	1356	310aa	ENSP00000289135.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BXJ6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000490835.1	ESYT3-006	2398	501aa	ENSP00000417388.1	Nonsense mediated decay		A0FGR9	-	-
ENST00000460133.1	ESYT3-004	4620	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486831.1	ESYT3-002	4044	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460325.1	ESYT3-005	531	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468103.1	ESYT3-007	462	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 23, Coding exons: 23, Transcript length: 4,407 bps, Translation length: 886 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A0FGR9

CCDS

This transcript is a member of the Human CCDS set: CCDS3101

Version

ENST00000389567.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000303993 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000389567.4 ESYT3-001

Summary