Transcript: ENST00000289004.4 HPD-002

Description

4-hydroxyphenylpyruvate dioxygenase [Source:HGNC Symbol;Acc:5147]

Gene Synonyms

4-HPPD, 4HPPD, GLOD3, HPPDASE, PPD

Location

About this transcript

This transcript has 14 exons, is annotated with 10 domains and features, is associated with 9553 variant alleles and maps to 505 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000289004.4	HPD-002	1419	393aa	ENSP00000289004.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9224	-	NM_002150.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543163.1	HPD-001	1709	354aa	ENSP00000441677.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53839	P32754	NM_001171993.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543869.2	HPD-005	364	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000542159.1	HPD-004	789	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535114.1	HPD-003	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 1,419 bps, Translation length: 393 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS9224

Version

ENST00000289004.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000402184 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.