Transcript: ENST00000347547.2 LRP8-011

Description

low density lipoprotein receptor-related protein 8, apolipoprotein e receptor [Source:HGNC Symbol;Acc:6700]

Gene Synonyms

APOER2, HSZ75190, LRP-8, MCI1, RP5-1024G6.8

Location

Chromosome 1: 53,712,690-53,793,584 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 69 domains and features, is associated with 32178 variant alleles and maps to 545 oligo probes.

Gene

This transcript is a product of gene ENSG00000157193.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000306052.6	LRP8-001	4467	963aa	ENSP00000303634.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS578	Q14114	NM_004631.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371454.2	LRP8-002	3322	904aa	ENSP00000360509.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30720	E9PP15 Q14114	NM_001018054.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000465675.1	LRP8-004	2670	457aa	ENSP00000437009.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PP15	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000354412.3	LRP8-003	2553	700aa	ENSP00000346391.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS579	Q14114	NM_017522.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000347547.2	LRP8-011	2382	793aa	ENSP00000334522.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS580	Q14114	NM_033300.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000475501.1	LRP8-009	721	240aa	ENSP00000436651.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000480045.1	LRP8-005	3231	392aa	ENSP00000433554.1	Nonsense mediated decay		E9PKG2	-	-
ENST00000529670.1	LRP8-012	660	121aa	ENSP00000431241.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000481431.1	LRP8-008	627	135aa	ENSP00000435346.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000460214.1	LRP8-007	775	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000459674.1	LRP8-006	3300	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000496580.1	LRP8-010	507	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 2,382 bps, Translation length: 793 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14114

CCDS

This transcript is a member of the Human CCDS set: CCDS580

Version

ENST00000347547.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000387761 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000347547.2 LRP8-011

Summary