Transcript: ENST00000331523.2 EEF1A1-004

Description

eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:3189]

Gene Synonyms

CCS-3, CCS3, EE1A1, EEF-1, EEF1A, EF-Tu, EF1A, GRAF-1EF, HNGC:16303, LENG7, PTI1, eEF1A-1

Location

Chromosome 6: 74,227,244-74,231,444 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 20 domains and features, is associated with 2990 variant alleles and maps to 1268 oligo probes.

Gene

This transcript is a product of gene ENSG00000156508.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000316292.9	EEF1A1-001	4441	462aa	ENSP00000339063.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4980	A6PW80 P68104 Q2F837 Q504Z0 Q5JR01 Q6IPS9 Q6IQ15 Q6P4C9 Q8IUB0 Q96C29 Q96EB3	NM_001402.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000309268.6	EEF1A1-009	2303	462aa	ENSP00000339053.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4980	A6PW80 P68104 Q2F837 Q504Z0 Q5JR01 Q6IPS9 Q6IQ15 Q6P4C9 Q8IUB0 Q96C29 Q96EB3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000331523.2	EEF1A1-004	1923	462aa	ENSP00000330054.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4980	A6PW80 P68104 Q2F837 Q504Z0 Q5JR01 Q6IPS9 Q6IQ15 Q6P4C9 Q8IUB0 Q96C29 Q96EB3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000455918.1	EEF1A1-003	701	106aa	ENSP00000392366.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6PW80	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000356303.2	EEF1A1-015	635	145aa	ENSP00000348651.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6PW80 Q5JR01	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000491404.1	EEF1A1-014	633	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490569.1	EEF1A1-008	1802	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495333.1	EEF1A1-002	958	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000488500.1	EEF1A1-011	792	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 1,923 bps, Translation length: 462 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P68104

CCDS

This transcript is a member of the Human CCDS set: CCDS4980

Version

ENST00000331523.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000128713 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000331523.2 EEF1A1-004

Summary