Transcript: ENST00000474835.1 USP16-004

Description

ubiquitin specific peptidase 16 [Source:HGNC Symbol;Acc:12614]

Gene Synonyms

UBP-M, UBPM, Ubp-M

Location

Chromosome 21: 30,396,972-30,426,809 forward strand.

About this transcript

This transcript has 17 exons, is associated with 13103 variant alleles and maps to 678 oligo probes.

Gene

This transcript is a product of gene ENSG00000156256.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000334352.4	USP16-003	3004	823aa	ENSP00000334808.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13583	H9KVB6 Q9Y5T5	NM_001032410.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399976.2	USP16-002	2963	823aa	ENSP00000382858.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13583	H9KVB6 Q9Y5T5	NM_006447.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399975.3	USP16-001	2960	822aa	ENSP00000382857.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42912	H9KVB6 Q9Y5T5	NM_001001992.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000535828.1	USP16-201	1460	452aa	ENSP00000442855.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DUS4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399973.1	USP16-006	581	107aa	ENSP00000382855.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H9KVB6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000474835.1	USP16-004	3835	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485067.1	USP16-005	2259	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 0, Transcript length: 3,835 bps,

Version

ENST00000474835.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000171848 (version 1)

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Transcript: ENST00000474835.1 USP16-004

Summary