Transcript: ENST00000506590.1 CXCL13-002

Description

chemokine (C-X-C motif) ligand 13 [Source:HGNC Symbol;Acc:10639]

Gene Synonyms

ANGIE, ANGIE2, BCA-1, BCA1, BLC, BLR1L, SCYB13

Location

About this transcript

This transcript has 3 exons, is associated with 2107 variant alleles and maps to 280 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000286758.4	CXCL13-001	1203	109aa	ENSP00000286758.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3582	O43927 Q53X90	NM_006419.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506590.1	CXCL13-002	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 540 bps,

Version

ENST00000506590.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000362904 (version 2)