Transcript: ENST00000286758.4 CXCL13-001

Description

chemokine (C-X-C motif) ligand 13 [Source:HGNC Symbol;Acc:10639]

Gene Synonyms

ANGIE, ANGIE2, BCA-1, BCA1, BLC, BLR1L, SCYB13

Location

About this transcript

This transcript has 5 exons, is annotated with 15 domains and features, is associated with 50738 variant alleles and maps to 301 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000286758.4	CXCL13-001	1203	109aa	ENSP00000286758.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3582	O43927 Q53X90	NM_006419.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506590.1	CXCL13-002	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,203 bps, Translation length: 109 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43927

CCDS

This transcript is a member of the Human CCDS set: CCDS3582

Version

ENST00000286758.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252519 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.